Package: StAMPP
Type: Package
Title: Statistical Analysis of Mixed Ploidy Populations
Depends: R (>= 3.2.0), pegas
Imports: parallel, doParallel, foreach, adegenet, methods, utils
Version: 1.6.3.9000
Date: 2021-11-27
Author: LW Pembleton
Maintainer: LW Pembleton <lwpembleton@gmail.com>
Description: Allows users to calculate pairwise Nei's Genetic Distances
        (Nei 1972), pairwise Fixation Indexes (Fst) (Weir & Cockerham
        1984) and also Genomic Relationship matrixes following Yang et
        al. (2010) in mixed and single ploidy populations.
        Bootstrapping across loci is implemented during Fst calculation
        to generate confidence intervals and p-values around pairwise
        Fst values. StAMPP utilises SNP genotype data of any ploidy
        level (with the ability to handle missing data) and is coded to
        utilise multithreading where available to allow efficient
        analysis of large datasets. StAMPP is able to handle genotype
        data from genlight objects allowing integration with other
        packages such adegenet. Please refer to LW Pembleton, NOI Cogan
        & JW Forster, 2013, Molecular Ecology Resources, 13(5),
        946-952. <doi:10.1111/1755-0998.12129> for the appropriate
        citation and user manual. Thank you in advance.
URL: https://github.com/lpembleton/StAMPP,
        https://lpembleton.github.io/StAMPP/
BugReports: https://github.com/lpembleton/StAMPP/issues
License: GPL-3
RoxygenNote: 7.1.1
Encoding: UTF-8
Config/pak/sysreqs: cmake libglpk-dev make libicu-dev libuv1-dev
        libxml2-dev zlib1g-dev
Repository: https://lpembleton.r-universe.dev
Date/Publication: 2022-11-30 14:08:01 UTC
RemoteUrl: https://github.com/lpembleton/stampp
RemoteRef: HEAD
RemoteSha: 1fecdb79a0a982a7cb46e5d32a0fbf850d78e9d7
NeedsCompilation: no
Packaged: 2026-07-06 06:55:55 UTC; root