{ "_id": "6a23ba62530b9bc726bd8da3", "Package": "StAMPP", "Type": "Package", "Title": "Statistical Analysis of Mixed Ploidy Populations", "Version": "1.6.3.9000", "Date": "2021-11-27", "Author": "LW Pembleton", "Maintainer": "LW Pembleton ", "Description": "Allows users to calculate pairwise Nei's Genetic Distances\n(Nei 1972), pairwise Fixation Indexes (Fst) (Weir & Cockerham\n1984) and also Genomic Relationship matrixes following Yang et\nal. (2010) in mixed and single ploidy populations.\nBootstrapping across loci is implemented during Fst calculation\nto generate confidence intervals and p-values around pairwise\nFst values. StAMPP utilises SNP genotype data of any ploidy\nlevel (with the ability to handle missing data) and is coded to\nutilise multithreading where available to allow efficient\nanalysis of large datasets. StAMPP is able to handle genotype\ndata from genlight objects allowing integration with other\npackages such adegenet. Please refer to LW Pembleton, NOI Cogan\n& JW Forster, 2013, Molecular Ecology Resources, 13(5),\n946-952. for the appropriate\ncitation and user manual. Thank you in advance.", "URL": "https://github.com/lpembleton/StAMPP,\nhttps://lpembleton.github.io/StAMPP/", "BugReports": "https://github.com/lpembleton/StAMPP/issues", "License": "GPL-3", "RoxygenNote": "7.1.1", "Encoding": "UTF-8", "Config/pak/sysreqs": "cmake libglpk-dev make libicu-dev libuv1-dev\nlibxml2-dev zlib1g-dev", "Repository": "https://lpembleton.r-universe.dev", "Date/Publication": "2022-11-30 14:08:01 UTC", "RemoteUrl": "https://github.com/lpembleton/stampp", "RemoteRef": "HEAD", "RemoteSha": "1fecdb79a0a982a7cb46e5d32a0fbf850d78e9d7", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-06 06:08:36 UTC", "User": "root" }, "MD5sum": "6cc8aa4d8d148ddfd2d1b93d8b715711", "_user": "lpembleton", "_type": "src", "_file": "StAMPP_1.6.3.9000.tar.gz", "_fileid": "d21df0ed26eb044927dd139207385851947c4a8fb782f1e24332a73e7433a167", "_filesize": 191633, "_sha256": "d21df0ed26eb044927dd139207385851947c4a8fb782f1e24332a73e7433a167", "_created": "2026-06-06T06:08:36.000Z", 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